Visualization#
A number of visualization are available. For anything which doesn’t require fast user feedback or static plots you can probably just use matplotlib
and seaborn
. For visualization of movies, such as after motion correction, the reconstructed movie after CNMF, residuals etc, or drawing thousands of ROIs, we highly recommend fastplotlib
. The demo notebooks provide extensive examples using fastplotlib
to visualize the motion corrected movie, spatial contours, reconstructed movie, residuals, and reconstructed background.
fastplotlib: https://github.com/kushalkolar/fastplotlib
mesmerize-viz: https://github.com/kushalkolar/mesmerize-viz
demo notebooks: https://github.com/nel-lab/mesmerize-core/tree/master/notebooks
fastplotlib demo#
..image:: https://user-images.githubusercontent.com/9403332/210304473-f36f2aaf-319e-435b-bcc8-0e8d3e1ef282.gif