API Reference

CaImAn Extensions

• Common
  • DataFrame Extensions
    • CaimanDataFrameExtensions
  • Series Extensions
    • CaimanSeriesExtensions
• Motion Correction
  • MCorrExtensions
    • MCorrExtensions.get_output_path()
    • MCorrExtensions.get_output()
    • MCorrExtensions.get_shifts()
• CNMF
  • CNMFExtensions
    • CNMFExtensions.get_cnmf_memmap()
    • CNMFExtensions.get_output_path()
    • CNMFExtensions.get_output()
    • CNMFExtensions.get_masks()
    • CNMFExtensions.get_contours()
    • CNMFExtensions.get_temporal()
    • CNMFExtensions.get_rcm()
    • CNMFExtensions.get_rcb()
    • CNMFExtensions.get_residuals()
    • CNMFExtensions.run_detrend_dfof()
    • CNMFExtensions.get_detrend_dfof()
    • CNMFExtensions.run_eval()
    • CNMFExtensions.get_good_components()
    • CNMFExtensions.get_bad_components()

Functions

• Utility Functions
  • create_batch()
  • load_batch()
  • set_parent_raw_data_path()
  • get_parent_raw_data_path()

Lazy Arrays

• Lazy Readers
• Lazy Arrays for CNMF
• Base LazyArray