A number of visualization are available. For anything which doesn’t require fast user feedback or static plots you can probably just use matplotlib and seaborn. For visualization of movies, such as after motion correction, the reconstructed movie after CNMF, residuals etc, or drawing thousands of ROIs, we highly recommend fastplotlib. The demo notebooks provide extensive examples using fastplotlib to visualize the motion corrected movie, spatial contours, reconstructed movie, residuals, and reconstructed background.

fastplotlib demo#